blastp

linux

Protein-Protein BLAST.

Examples (6)

Align two or more sequences using blastp, with the e-value threshold of 1e-9, pairwise output format, output to screen

blastp -query query.fa -subject subject.fa -evalue 1e-9

Align two or more sequences using blastp-fast

blastp -task blastp-fast -query query.fa -subject subject.fa

Align two or more sequences, custom tabular output format, output to file

blastp -query query.fa -subject subject.fa -outfmt '6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident' -out output.tsv

Search protein databases using a protein query, 16 threads to use in the BLAST search, with a maximum number of 10 aligned sequences to keep

blastp -query query.fa -db blast_database_name -num_threads 16 -max_target_seqs 10

Search the remote non-redundant protein database using a protein query

blastp -query query.fa -db nr -remote

Display help (use `-help` for detailed help)

blastp -h