Examples (3)
Fastest method in mashtree to create a tree from fastq and/or fasta files using multiple threads, piping into a newick file
mashtree --numcpus 12 *.fastq.gz *.fasta > mashtree.dndMost accurate method in mashtree to create a tree from fastq and/or fasta files using multiple threads, piping into a newick file
mashtree --mindepth 0 --numcpus 12 *.fastq.gz *.fasta > mashtree.dndMost accurate method to create a tree with confidence values (note that any options for `mashtree` itself has to be on the right side of the `--`)
mashtree_bootstrap.pl --reps 100 --numcpus 12 *.fastq.gz -- --min-depth 0 > mashtree.bootstrap.dndmade by @shridhargupta | data from tldr-pages