snakefmt

all

Format Snakemake files.

Examples (5)

Format a specific Snakefile

snakefmt path/to/snakefile

Format all Snakefiles recursively in a specific directory

snakefmt path/to/directory

Format a file using a specific configuration file

snakefmt --config path/to/config.toml path/to/snakefile

Format a file using a specific maximum line length

snakefmt --line-length 100 path/to/snakefile

Display the changes that would be performed without performing them (dry-run)

snakefmt --diff path/to/snakefile