treetime

linux

TreeTime provides routines for ancestral sequence reconstruction and inference of molecular-clock phylogenies.

Examples (4)

Infer ancestral sequences maximizing the joint or marginal likelihood

treetime ancestral

Analyze patterns of recurrent mutations aka homoplasies

treetime homoplasy

Estimate molecular clock parameters and reroot the tree

treetime clock

Map discrete character such as host or country to the tree

treetime mugration